GetAverage

GetAverage

Usage

GetAverage(organism, organ, features)

Arguments

organism

The organism you would like to query

organ

The organ you would like to query

features

An array/list of features (e.g. genes) you would like to query

Value

A data.frame of average gene expression by cell type in that organism and organ

Examples

GetAverage("h_sapiens", "Lung", c("COL1A1", "PTPRC"))
#>                              COL1A1        PTPRC
#> neutrophil              0.014522638 2.231271e+01
#> basophil                0.005077871 2.443684e+00
#> monocyte                0.003399504 7.794549e+00
#> macrophage              0.002812853 2.801027e+00
#> dendritic               0.013302779 4.313318e+00
#> B                       0.000000000 3.000779e+00
#> plasma                  0.009642163 4.200674e-01
#> T                       0.009203196 1.051312e+01
#> NK                      0.063305810 1.143152e+01
#> plasmacytoid            0.000000000 2.168309e+00
#> goblet                  0.145349205 1.898965e-01
#> AT1                     0.109001435 9.707276e-02
#> AT2                     0.058521412 1.457898e-01
#> club                    0.071080528 3.052110e-01
#> ciliated                0.060997065 2.264476e-01
#> basal                   0.064534329 2.570614e-01
#> serous                  0.000000000 3.813045e-01
#> mucous                  0.116527453 0.000000e+00
#> arterial                0.031918123 1.409595e-01
#> venous                  0.007172978 3.115328e-01
#> capillary               0.004225238 1.500604e-01
#> CAP2                    0.022919910 1.768180e-01
#> lymphatic               0.000000000 2.947334e-04
#> fibroblast             10.089125633 5.332901e-02
#> alveolar fibroblast     4.771382809 1.934833e-01
#> smooth muscle           2.049613953 5.999142e-01
#> vascular smooth muscle  2.203665972 4.121004e-01
#> pericyte                0.038223870 6.380575e-01
#> mesothelial             1.449272752 5.869431e-01
#> ionocyte                0.000000000 5.413984e-01