GetFractionDetected

GetFractionDetected

Usage

GetFractionDetected(organism, organ, features)

Arguments

organism

The organism you would like to query

organ

The organ you would like to query

features

An array/list of features (e.g. genes) you would like to query

Value

A data.frame of fraction of expressing cells by cell type in that organism and organ

Examples

GetFractionDetected("h_sapiens", "Lung", c("COL1A1", "PTPRC"))
#>                             COL1A1      PTPRC
#> neutrophil             0.011494253 0.92528737
#> basophil               0.002915452 0.65014577
#> monocyte               0.002186589 0.93330902
#> macrophage             0.004276316 0.94777960
#> dendritic              0.009493670 0.94303799
#> B                      0.000000000 0.60919541
#> plasma                 0.014925373 0.36567163
#> T                      0.003825555 0.93114001
#> NK                     0.007575758 0.95454544
#> plasmacytoid           0.000000000 0.72222221
#> goblet                 0.172413796 0.16710876
#> AT1                    0.085308060 0.07109005
#> AT2                    0.115569651 0.11589766
#> club                   0.047206167 0.10886320
#> ciliated               0.069767445 0.11627907
#> basal                  0.049360145 0.12568556
#> serous                 0.000000000 0.20000000
#> mucous                 0.375000000 0.00000000
#> arterial               0.010695187 0.05347594
#> venous                 0.007874016 0.10236221
#> capillary              0.002672011 0.05678023
#> CAP2                   0.003514939 0.05975395
#> lymphatic              0.000000000 0.02127660
#> fibroblast             0.890909076 0.03116883
#> alveolar fibroblast    0.595678985 0.07098766
#> smooth muscle          0.534482777 0.11206897
#> vascular smooth muscle 0.500000000 0.11250000
#> pericyte               0.014084507 0.13145539
#> mesothelial            0.764705896 0.29411766
#> ionocyte               0.000000000 0.21052632